That's definitely different, because the SNES and N64 Mystical Ninja games are two separate games and have completely different stories.

I thought of a few more...


At the end of Mega Man in Dr. Wily's Revenge for Game Boy, Dr. Wily's castle is in space.

Ditto for the end of Mega Man 2 for Game Boy.

I thought of another floating area of Chrono Trigger...when you go to meet the Guru on Mt. Woe, the top of the mountain is floating. The only thing keeping it from flying away is a chain.
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